2 jobs found

The Department of Genetics in the Stanford University School of Medicine is a world-renowned hub for innovation in genomics, computational biology, and translational research. Our lab focuses on developing next-generation computational frameworks and automatic data analyses systems to analyze single-cell and spatial omics data, enabling new discoveries in developmental biology and disease modeling. We are seeking up to two Software Developer 1 to join our interdisciplinary team and support the development of a modular automatic data analyses system for automating single-cell and spatial data analysis. The ideal candidate will contribute to the design, implementation, and scaling of cloud-based applications that power predictive models of organogenesis and disease progression. This is an excellent opportunity to work at the forefront of biomedical data science, collaborating with world-class researchers, engineers, and entrepreneurs in a fast-paced academic and translational...

Stanford University School of Medicine and the Heart Center Clinical and Translational Research Program (CTRP) are seeking a Research Data Analyst 2. Duties include: Extract clinical and operational data from internal data repositories into usable formats and develop pipeline for ongoing data extraction with new data generation, using SQL, Python, R, or other appropriate languages. Compile survey data and clinical research data into usable formats. Identify relevant publicly available datasets and registries, from the National Institutes of Health, multi-institutional collaboratives, and various other sources. Obtain and harmonize external data with local data, including activities such as converting among data storage formats, merging based on common identifiers, excluding irrelevant data, consolidating naming and labeling strategies, and generating analysis-ready datasets. Conduct feature engineering and missing data imputation as needed, and...